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Almond Mushroom, ABM · 2021 · Preprint

Medium relevance

abmR: an R package for agent-based model analysis of large-scale movements across taxa

Agaricus blazei

SpeciesAlmond Mushroom, ABM
JournalNot listed
Year2021

Key points

  • Agent-based modeling (ABM) shows promise for animal movement studies
  • However, a robust, open-source, and spatially explicit ABM coding platform is currently lacking
  • We present abmR, an R package for conducting continental-scale ABM simulations across animal taxa
  • The package features two movement functions, each of which relies on the Ornstein-Uhlenbeck (OU) process
  • The theoretical background for abmR is discussed and the main functionalities are illustrated using example populations
  • Potential future additions to this open-source package may include the ability to specify multiple environmental variables or to model interactions between agents

From the paper

Abstract

Agent-based modeling (ABM) shows promise for animal movement studies. However, a robust, open-source, and spatially explicit ABM coding platform is currently lacking. We present abmR, an R package for conducting continental-scale ABM simulations across animal taxa. The package features two movement functions, each of which relies on the Ornstein-Uhlenbeck (OU) process. The theoretical background for abmR is discussed and the main functionalities are illustrated using example populations. Potential future additions to this open-source package may include the ability to specify multiple environmental variables or to model interactions between agents. Additionally, updates may offer opportunities for disease ecology and integration with other R movement modeling packages.

Citation

Gochanour B, Fernández-López J, Contina A (2021). abmR: an R package for agent-based model analysis of large-scale movements across taxa. https://doi.org/10.1101/2021.09.15.460374

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