MycoData

Abstract Software-based artificial life methods use mathematical and computational models to mimic complexity in living systems. Although such methods seem promising pertaining to exploring emergent behaviour, obtaining the governing rulesets of such methods remains challenging..

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Leveraging agent-based models and deep reinforcement learning to predict taxis in cell migration: Insights from barotaxis

We present a novel computational framework that combines Agent-Based Modeling (ABM) with Reinforcement Learning (RL) using the Double Deep Q-Network (DDQN) algorithm to determine cellular behavior in response to environmental signals..

Cognition & nerves

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

License to Simulate: When Agent-Based Models Are More Fiction Than Function

Agent-based models (ABMs) are increasingly used to study supply chain (SC) systems due to their capacity to capture decentralised behaviour, heterogeneity, and emergent dynamics. However, the mere use of agent-based simulation platforms does not necessarily imply that the models fully exploit the agent-based paradigm..

Cognition & nerves

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Modelling Immune Dynamics in Locally Advanced MSI-H/dMMR Colorectal Cancer with Neoadjuvant Pembrolizumab Treatment: From Differential Equations to an Agent-Based Framework

Colorectal cancer (CRC) is the third most common malignancy worldwide, and accounts for approximately 10% of all cancers and an estimated 850,000 deaths annually..

OncologyImmune support

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Modelling the emergence of spiral colony morphology in the yeast Magnusiomyces magnusii

Yeast species have several adaptations that enable them to survive in harsh environments. These adaptations include biofilm formation, where the secretion of extracellular polymeric substances can protect the cells from a hostile environment, or, under nutrient-limited conditions, pseudohyphal or hyphal growth, where….

Gut & microbiome

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Precision Elimination: Proof-of-Concept In Silico Testing of a Novel Construct for Optimizing HIV-1 Eradication

Background: /Objectives: Human immunodeficiency virus type 1 (HIV-1) persists in individuals on combination antiretroviral therapy (cART) due to the existence of latent reservoirs that evade immune detection..

OncologyImmune supportRespiratory

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Pro- and Anti-Science Opinion Model (PASOM) Documentation

This document describes the Pro- and Anti-Science Opinions Model (PASOM)—an agent-based model (ABM) of social media activity around a single topic. The topic is one with a true (or likely true) belief (a pro-science belief) and a false (or likely false) belief (an anti-science belief), and agents update their beliefs….

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Pro- and Anti-Science Opinion Model (PASOM) Documentation

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Quantitative and Spatially Explicit Clustering of Urban Grocery Shoppers in Montreal: Integrating Loyalty Data with a Synthetic Population

This study integrates customer loyalty program data with a synthetic population to analyze grocery shopping behaviours in Montreal. Using clustering techniques, we classify 295,631 loyalty program members into seven distinct consumer segments based on behavioural and sociodemographic attributes..

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Randomized Trial of Bioceramic Apical Barrier Methods in Necrotic Immature Incisors: Effects on Pain, Extrusion, and Procedure Duration

Objective: This randomized controlled trial evaluated postoperative pain (PP), bioceramic extrusion (BE), and procedure duration (ABVD) in necrotic immature incisors treated with three apical barrier methods (ABMs): Bioceramic Putty Apical Plug (BPAP), Single Cone with Bioceramic Sealer (SBS), and Bioceramic….

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Reproducing Stylized Facts in Artificial Stock Markets with Price-Data- Trained Neural Agents

Abstract Traditional agent-based models (ABMs) of financial markets rely on handcrafted behavioral rules, limiting their realism, robustness, and scalability. To overcome these constraints, we propose a fully data-driven ABM in which each agent’s decision logic is learned directly from historical price series through….

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

SwimmingIndividuals: A High-Performance Agent-Based Model for Marine Ecosystems

Mechanistic models are essential for projecting ecosystem responses to novel conditions, yet the application and biological realism of agent-based models (ABMs) has often been limited by computational constraints..

Energy & fatigue

Medium relevance

Almond Mushroom · 2025 · Preprint · journal metadata

Tokenized Incentives and Loyalty: Leveraging Blockchain-Based Smart Contracts for Enhancing Eco-Tourism Behavioral Engagement

Abstract This research investigates ways in which blockchain smart contracts and gamified token rewards can increase eco-tourists' engagement and loyalty to online sustainability practices..

Cognition & nerves

Medium relevance

Maitake · 2025 · Preprint · journal metadata

WITHDRAWN: Effect of Wheat Grain Moxibustion on Immune Function in Immunosuppressed Rats via JAK2-STAT3 Pathway

Abstract Background Diseases of the immune system are increasingly significant in an aging society. These diseases, ranging from mild to severe, occur when the body is immunocompromised or immunosuppressed, impacting the quality of life and presenting a serious medical challenge for contemporary society..

Immune support

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

4D hybrid model interrogates agent-level rules and parameters driving hiPS cell colony dynamics

Iterating between data-driven research and generative computational models is a powerful approach for emulating biological systems, testing hypotheses, and gaining a deeper understanding of these systems..

Gut & microbiomeSkin & hydration

Medium relevance

Oyster Mushroom · 2024 · Preprint · journal metadata

A new regulator of sporulation sheds light on spore morphogenesis and ballistospory in mushroom-forming fungi

Sporulation is the most widespread means of reproduction and dispersal in fungi. In the Basidiomycota, sexual spores are produced on specialised cells known as basidia, from which they are discharged forcibly by a powered process called ballistospory, the highest known acceleration in nature..

Medium relevance

Almond Mushroom · 2024 · Preprint · bioRxiv: the preprint server for biology

Agent-based model demonstrates the impact of nonlinear, complex interactions between cytokines on muscle regeneration.

Muscle regeneration is a complex process due to dynamic and multiscale biochemical and cellular interactions, making it difficult to identify microenvironmental conditions that are beneficial to muscle recovery from injury using experimental approaches alone..

OncologyImmune supportEnergy & fatigueLiver support

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Agent-Based Modeling for Construction Resource Positioning Using Digital Twin and BLE Technologies

The domain of construction engineering and management is evolving rapidly. Optimizing resource positioning is crucial for meeting the challenges of efficiency and productivity..

Energy & fatigue

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Agent-based modeling reveals impacts of cell adhesion and matrix remodeling on cancer collective cell migration phenotypes

Understanding the phenotypic transitions of cancer cells is crucial for elucidating tumor progression mechanisms, particularly the transition from a non-invasive spheroid phenotype to an invasive network phenotype..

OncologyEnergy & fatigue

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

An Agent-based Modeling Framework for Learning Progression Research in Middle School Mathematics Curriculum

Abstract Large-scale experimental studies on Learning Progression (LP) in middle school mathematics face challenges, such as resource limitations and ethical considerations..

Cognition & nerves

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Attention bias at baseline does not moderate the effect of attention bias modification for depressive symptoms

Background Clinical trials of Attention Bias Modification for depressive symptoms have consistently produced small effect sizes and mixed results. Therefore, identifying subpopulations for whom this intervention works has been called for..

Cognition & nerves

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Characterizing Individual Occupation and Travel Heat Burdens through Exposure and Reprieve

Abstract Heat exposure for urban populations has become more prevalent as the temperature and duration of heat waves in cities increase. Occupational exposure to heat is a major concern for personal health, and excessive heat exposure can cause devastating outcomes..

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Cost-benefit of Influenza Vaccinations in Frontline Workers: A Dynamic Modelling Study

Influenza significantly impacts public health, particularly among the elderly and those with underlying health conditions, but it also imposes substantial economic and operational burdens on the working-age population..

Cognition & nervesRespiratory

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

D3.1 Case Study Base Layer dataset for each of the case studies

The Case Study Base Layer, described in this deliverable, is a harmonised geospatial database spanning across the five case study areas of BESTMAP: South Moravia (Czech Republic), Mulde (Germany), Humber (Great Britain), Backa (Serbia), and Catalonia (Spain)..

Liver support

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

D3.2 European Base Layer

The European Base Layer, described in this deliverable, is a harmonised geospatial database spanning across Europe. It builds upon the infrastructure created for the Case Study Base Layer (D3.1) and includes geospatial information on climatic and soil conditions, biodiversity, land use/land cover (including crop….

Liver support

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Effective Evolutionary Principles for System-of-Systems: Insights from Agent-Based Modeling in Vehicular Networks

System-of-systems (SoS) evolution is a complex and unpredictable process. Although various principles to facilitate collaborative SoS evolution have been proposed, there is a lack of experimental data validating their effectiveness..

Energy & fatigue

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Enhancing Radiological Emergency Response through Agent-Based Model Case 2: Time Required for Staff Assemble

Abstract As society becomes more complex, the importance of quick and effective emergency response systems gets more emphasized. This paper introduces a way to reduce the time it takes for emergency staff assembly to be handled during radioactive accidents, which is one of significant factors to manage early-stage….

Medium relevance

Cordyceps · 2024 · Preprint · journal metadata

Evaluation of Biopesticides for Management of Bemisia tabaci MEAM1 (Hemiptera: Aleyrodidae) in Florida

The sweetpotato whitefly, Bemisia tabaci MEAM1, is a pest known to significantly impact tomato development and yields through direct damage and virus transmission. To manage this pest, the current study compared the effectiveness of various insecticide rotations..

Respiratory

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Exploring Chaotic Dynamics: A Fractal-Fractional Approach to Financial Modeling and Stability Analysis

Abstract This search uses fractal and fractional derivatives to construct a nancial chaotic model (FCM). The existence and uniqueness of the solution are proved by using the xed point theorem..

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Exploring the Role of Genetic and Environmental Features in Colorectal Cancer Development: An Agent-Based Approach

Complexity of issues in cancer research has led to the introduction of powerful computational tools for helping experimental in vivo and in vitro methods. These tools, typically focused on studying cell behavior and dynamic cell populations, range from systems of differential equations solved numerically, to lattice….

OncologyGut & microbiome

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Exploring the spatial-temporal arrangements of urban activity space from individual's daily commute: A Geospatial-Agent based Approach Using Empirical Data

Abstract The study explores the significance of individual mobility measures, such as activity space, in understanding how individuals interact with their daily environments..

Medium relevance

Shiitake · 2024 · Preprint · journal metadata

Growing meat on vegetables: plants with natural biomimetic micro-patterns as edible meat-engineering scaffolds

Abstract Cultured meat needs edible bio-scaffolds that provide not only an appropriate growth milieu for muscle and adipose cells, but also biomimetic microstructures to sculpt tissue architecture..

Energy & fatigueMetabolic health

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Integrating Mathematical Optimization to Enhance Sustainability in a Crop and Dairy Production Agent-Based Model for Luxembourg

To curb the impacts arising from the agricultural sector the actions undertaken by policymakers, and ultimately by the farmers, are of paramount importance. However, finding the best strategy to reduce impacts, and especially assessing the effects of the interactions and mutual influence among farmers, is very….

Medium relevance

Chaga · 2024 · Preprint · journal metadata

Liver-X receptor β-selective agonist CE9A215 regulates Alzheimer’s disease- associated pathology in a 3xTg-AD mouse model

Abstract Background In Alzheimer's disease (AD), tau pathology is more closely associated with disease progression. Therefore, the development of agents that alleviate tau pathology is essential..

Immune supportCognition & nervesMetabolic healthLiver support

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Optimizing Crowd Evacuation: Evaluation of Strategies for Safety and Efficiency

Abstract Predicting and controlling crowd dynamics in emergencies is one of the main objectives of simulated emergency exercises. However, during emergency exercises, there is often a lack of sense of danger by the actors involved and concerns about exposing real people to potentially dangerous environments..

Energy & fatigue

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Predicting the Impact of Mobile Field Hospital Deployment in Reducing Patients Mean Wait Times in Emergency Departments: An Agent-Based Simulation Approach

Abstract Mean wait time (MWT) in emergency departments refer to the average time patients spend undergoing evaluation, or treatment at each stage, which can be significantly affected by sudden onsets of a disaster..

Medium relevance

Enoki · 2024 · Preprint · journal metadata

Research on optimization of Pricing and Replenishment Decision Making Problem Based on LightGBM and Dynamic Programming

The fresh-keeping period of vegetable commodities was relatively short, and its sales problem had always been of great concern under the vegetable production and distribution pattern of ”small production and big market” in China..

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

Space-Safeguarding vs Space-Management: Agent Based Modelling to Assess the Role and Effectiveness of Non-Pharmaceutical Interventions in COVID-19 Mitigation

Abstract Background: During the COVID-19 pandemic, school closures may have deprived students of crucial opportunities for growth and development. This study is motivated by the challenge of responding to future infectious disease pandemics while minimising the educational and social impacts school closures may have..

Respiratory

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

The Proliferation of Artificial Intelligence in the Forklift Industry – an Analysis for the Case of Romania

This paper delves into the transformative impact of artificial intelligence (AI) in the forklift industry, particularly focusing on logistics and procurement within small and medium-sized enterprises (SMEs) in the field of industrial machinery..

Medium relevance

Almond Mushroom · 2024 · Preprint · journal metadata

The Proliferation of Artificial Intelligence in the Forklift Industry—The Case of Romania as an Emerging Market

Medium relevance

Almond Mushroom · 2020 · Review · Annals of botany

An overview of agent-based models in plant biology and ecology.

Agent-based modelling (ABM) has become an established methodology in many areas of biology, ranging from the cellular to the ecological population and community levels. In plant science, two different scales have predominated in their use of ABM..

Medium relevance

Almond Mushroom · 2020 · Research Support, Non U.S. Gov'T · PloS one

Comparative transcriptome analysis reveals candidate genes related to cadmium accumulation and tolerance in two almond mushroom (Agaricus brasiliensis) strains with contrasting cadmium tolerance.

Cadmium (Cd) is a toxic metal occurring in the environment naturally. Almond mushroom (Agaricus brasiliensis) is a well-known cultivated edible and medicinal mushroom.

Immune support

Medium relevance

Almond Mushroom · 2020 · Review · Journal of the National Medical Association

Factors that Influence Mammography Use for Breast Cancer Screening among African American Women.

OBJECTIVES: The purpose of this study was to assess factors that influence use of mammography screening among African American women, with a focus on social and cultural influences using Andersen's behavioral model (ABM), and to assess the methodological quality of the included studies..

Oncology

Medium relevance

Oyster Mushroom · 2020 · Evaluation Study · Journal of food science

Fruiting-body-base flour from an Oyster mushroom waste in the development of antioxidative chicken patty.

In a commercial oyster mushroom farm, from 300 g of the total harvest, only the cap and stem of the fruiting body parts are harvested (200 g) while the unused lower section called fruiting-body-base (FBB) is discarded (50 g)..

Medium relevance

Almond Mushroom · 2020 · Review · Infection and drug resistance

Management of Acute Bacterial Meningitis in Children.

Acute community-acquired bacterial meningitis (ABM) in children continues to have high rates of neurological morbidity and mortality despite the overall declining rates of infection attributed to the use of vaccines and intrapartum Group B Streptococcus prophylaxis..

Immune supportCognition & nervesRespiratory

Medium relevance

Almond Mushroom · 2019 · Review · mBio

Evolutionary Perspectives on the Moonlighting Functions of Bacterial Factors That Support Actin-Based Motility.

Various bacterial pathogens display an intracellular lifestyle and spread from cell to cell through actin-based motility (ABM). ABM requires actin polymerization at the bacterial pole and is mediated by the expression of bacterial factors that hijack the host cell actin nucleation machinery or exhibit intrinsic actin….

Medium relevance

Shiitake · 2019 · Case Reports · Case reports in dermatology

Flagellate Dermatitis by Shiitake Mushroom.

The authors present a case of flagellate dermatitis in a previously healthy young male, triggered by the consumption of shiitake mushrooms. Complete remission without complications was obtained within 7 days, simply by the application of dexamethasone cream 0.1%..

Skin & hydration

Medium relevance

Enoki · 2018 · Comparative Study · Meat science

Application of winter mushroom powder as an alternative to phosphates in emulsion-type sausages.

This research evaluated the utilization of winter mushrooms as a replacement for phosphate in emulsion-type sausages. Winter mushroom powder (WMP) was added to the sausages at 0, 0.5, 1.0, 1.5, and 2.0% (w/w), and phosphate was added at 0.3% as a positive control..

Medium relevance

Maitake · 2017 · Research Support, Non U.S. Gov'T · Journal of evidence-based complementary & alternative medicine

Induction Effect to Apoptosis by Maitake Polysaccharide: Synergistic Effect of Its Combination With Vitamin C in Neuroglioma Cell.

Polysaccharide extracted from the Maitake mushroom (MP) is considered as a potential anticancer agent. The present study was performed to investigate the cytotoxic effects of MP and vitamin C (VC) alone and in combination on the viability of human neuroglioma M059 K cells in vitro..

OncologyImmune supportCognition & nerves

Medium relevance

Maitake · 2016 · Research Support, Non U.S. Gov'T · Scientific reports

The Prefrontal Dectin-1/AMPA Receptor Signaling Pathway Mediates The Robust and Prolonged Antidepressant Effect of Proteo-β-Glucan from Maitake.

Proteo-β-glucan from Maitake (PGM) is a strong immune regulator, and its receptor is called Dectin-1. Cumulative evidence suggests that AMPA receptors are important for the treatment of depression..

Immune supportCognition & nerves